This anlaysis shows the number of times a Domain has been found in the PIN-II PI database. This information can be retreived finding Domain Frequency in Sequence_Domains relation.
Domains Occurrences
IRD-133 39
IRD-84 29
IRD-536 25
IRD-559 23
IRD-122 19
IRD-93 18
IRD-560 17
IRD-551 15
IRD-83 15
IRD-152 14
IRD-121 13
IRD-541 12
IRD-90 12
IRD-143 11
IRD-467 11
IRD-552 9
IRD-604 9
IRD-387 8
IRD-444 8
IRD-658 8
IRD-153 7
IRD-172 7
IRD-412 7
IRD-451 7
IRD-606 7
IRD-103 6
IRD-596 6
IRD-615 6
IRD-689 6
IRD-12 5
IRD-176 5
IRD-232 5
IRD-78 5
IRD-165 4
IRD-166 4
IRD-169 4
IRD-211 4
IRD-240 4
IRD-255 4
IRD-315 4
It identifies number of Domains found in species. This information can be extracted from tables PI_General_Features, Taxonomy and Sequence_Domains.
Species Number Of IRDs
Capsicum annuum 133
Solanum tuberosum 81
Nicotiana tabacum 70
Solanum lycopersicum 44
Capsicum chinense 41
Nicotiana sylvestris 39
Capsicum baccatum 32
Nicotiana attenuata 28
Nicotiana obtusifolia 14
Nicotiana glutinosa 13
Nicotiana acuminata 13
Solanum chacoense 13
Solanum nigrum 11
Nicotiana occidentalis subsp. hesperis 11
Nicotiana repanda 11
Nicotiana rustica 10
Nicotiana miersii 10
Nicotiana pauciflora 10
Nicotiana clevelandii 10
Nicotiana alata 10
Selaginella moellendorffii 10
Nicotiana linearis 9
Nicotiana megalosiphon 9
Nicotiana quadrivalvis 9
Nicotiana umbratica 9
Nicotiana simulans 9
Nicotiana spegazzinii 9
Nicotiana benthamiana 7
Solanum americanum 7
Coffea canephora 5
Rosa chinensis 5
Nicotiana corymbosa 3
Cuscuta australis 3
Nicotiana cavicola 3
Dichanthelium oligosanthes 3
Solanum phureja 3
Sorghum bicolor 3
Triticum aestivum 3
Setaria italica 2
Zea mays 2
Genlisea aurea 2
Handroanthus impetiginosus 2
Leersia perrieri 2
Manihot esculenta 2
Medicago truncatula 2
Aegilops tauschii subsp. strangulata 2
Ananas comosus 2
Saccharum hybrid cultivar R570 2
Prunus dulcis 2
Prunus persica 2
Panicum hallii var. hallii 2
Panicum miliaceum 1
Parasponia andersonii 1
Populus trichocarpa 1
Prunus yedoensis var. nudiflora 1
Punica granatum 1
Ricinus communis 1
Aegilops tauschii 1
Noccaea caerulescens 1
Olea europaea 1
Oryza barthii 1
Oryza brachyantha 1
Oryza glaberrima 1
Oryza glumipatula 1
Oryza meridionalis 1
Oryza nivara 1
Oryza punctata 1
Oryza rufipogon 1
Oryza sativa subsp. indica 1
Oryza sativa subsp. japonica 1
Panicum hallii 1
Apostasia shenzhenica 1
Arabidopsis lyrata subsp. lyrata 1
Arabidopsis thaliana 1
Brachypodium distachyon 1
Brassica campestris 1
Brassica cretica 1
Brassica oleracea 1
Brassica oleracea var. oleracea 1
Brassica rapa subsp. pekinensis 1
Capsella rubella 1
Cuscuta campestris 1
Daucus carota subsp. sativus 1
Dendrobium catenatum 1
Cicer arietinum 1
Morus notabilis 1
Mucuna pruriens 1
Hordeum vulgare subsp. vulgare 1
Jatropha curcas 1
Juglans regia 1
Dorcoceras hygrometricum 1
Erythranthe guttata 1
Eucalyptus grandis 1
Fagus sylvatica 1
Setaria viridis 1
Solanum melongena 1
Triticum turgidum subsp. durum 1
Triticum urartu 1
Vitis vinifera 1
Spinacia oleracea 1
Trema orientale 1
It identifies the number of Domains found in Genus.
Genuss Number Of IRDs
Nicotiana 267
Capsicum 183
Solanum 151
Selaginella 10
Rosa 5
Coffea 5
Oryza 4
Panicum 3
Prunus 3
Cuscuta 3
Dichanthelium 3
Sorghum 3
Triticum 3
Zea 2
Saccharum 2
Setaria 2
Brassica 2
Aegilops 2
Ananas 2
Arabidopsis 2
Genlisea 2
Handroanthus 2
Leersia 2
Manihot 2
Medicago 2
Morus 1
Mucuna 1
Hordeum 1
Jatropha 1
Juglans 1
Punica 1
Ricinus 1
Noccaea 1
Olea 1
Parasponia 1
Populus 1
Brachypodium 1
Apostasia 1
Capsella 1
Cicer 1
Dorcoceras 1
Erythranthe 1
Eucalyptus 1
Fagus 1
Daucus 1
Dendrobium 1
Spinacia 1
Trema 1
Vitis 1
Here we find what combinations of Domains are found in the PIs sequences and how many sequences have these combinations. This information can be found from the sequence_domain table.
Number of Sequences Domains Count
170 1
22 2
50 3
11 4
76 5
2 6
15 7
6 9
2 10
17 11
1 12
4 13
3 15
1 21
It shows number of Domians having a particular count of Disulphide Bonds. This information can be retreived from table Disulphide Bonds.
n-Disulphide Bonds Number Of Domains
0 7
1 1
2 14
3 27
4 647
It shows how many Domains have a particular number of Cysteine in their sequences.
Cysteine Count Number Of Domains
3 2
4 6
5 1
6 2
7 36
8 641
9 7
To show the distribution of Amino Acids in the composition of Domain sequences, we find the average of percentage of each Amino Acid in all Domains.
Amino Acid Average Percentage
A 5.7
C 15.4
D 5
E 4.5
F 3.2
G 9.6
H 0.6
I 5
K 7
L 2.8
M 0.6
N 6.8
P 6.8
Q 1.3
R 5.3
S 6.1
T 6.3
U 0
V 2.4
W 0
X 0
Y 5.5
Z 0