Reactive Loops (RCL) Data Analysis
  2. Reactive Loops (RCL) Data Analysis
This anlaysis shows the number of times a RCL has been found in the PIN-II PI database. This information can be retreived finding RCL Frequency using Tables Sequence_Domains and Domains.
RCL Number Of Occurences
CPRNC 576
CTLNC 113
CPRYC 94
CPLNC 55
CTLEC 52
CPQFC 36
CTREC 34
CPLYC 31
CTKEC 26
CPQYC 24
CSKEC 21
CPKNC 17
CPFNC 16
CTFEC 14
CTFNC 13
CTQEC 11
CTQQC 10
CTTEC 8
CLQVC 8
CTRNC 8
CPRDC 7
CTMEC 7
CPLIC 7
CLQFC 6
CAMYC 6
CTQHC 6
CSRNC 5
CPQIC 5
CPANC 5
CPAIC 5
CPPNC 4
CPRIC 4
CPSYC 4
CRRNC 4
CPKEC 4
CIQVC 4
CSYEC 4
CPLFC 3
CLQYC 3
CNKIC 3
CHQYC 3
CLGNC 2
CPFYC 2
CPQNC 2
CHLNC 2
CPLVC 2
CTPNC 2
CTIEC 2
CTLDC 2
CTFKC 1
CTQDC 1
CPMYC 1
CPFFC 1
CPRFC 1
CSFNC 1
CYLIC 1
CYLYC 1
CLQKC 1
CIETC 1
CIREC 1
CIQIC 1
CIEIC 1
To find which RCLs are found in a particular specie and its number of Occurrences. This information can be retreived finding RCL Frequency in species using Tables Sequence_Domains,Taxonomy and Domains.
Species RCL Number Of Occurences
Aegilops tauschii CHQYC 1
Aegilops tauschii subsp. strangulata CHQYC 1
Aegilops tauschii subsp. strangulata CPQYC 1
Ananas comosus CPQYC 2
Apostasia shenzhenica CPLYC 1
Arabidopsis lyrata subsp. lyrata CPLYC 1
Arabidopsis thaliana CPLYC 2
Brachypodium distachyon CPQYC 1
Brassica campestris CPLYC 1
Brassica cretica CPLYC 1
Brassica oleracea CPLYC 1
Brassica oleracea var. oleracea CPLYC 1
Brassica rapa subsp. pekinensis CPLYC 1
Capsella rubella CPLYC 1
Capsicum annuum CPRNC 188
Capsicum annuum CPRYC 88
Capsicum annuum CTLNC 81
Capsicum annuum CTLEC 16
Capsicum annuum CPKNC 12
Capsicum annuum CTREC 6
Capsicum annuum CTQEC 4
Capsicum annuum CTQHC 4
Capsicum annuum CSRNC 3
Capsicum annuum CTKEC 2
Capsicum annuum CTMEC 2
Capsicum annuum CTPNC 2
Capsicum annuum CIQVC 2
Capsicum annuum CLQVC 2
Capsicum annuum CPQFC 2
Capsicum annuum CPQIC 1
Capsicum annuum CPRDC 1
Capsicum baccatum CPRNC 5
Capsicum baccatum CTLEC 4
Capsicum baccatum CPRYC 4
Capsicum baccatum CTKEC 2
Capsicum baccatum CTLDC 2
Capsicum baccatum CTQEC 2
Capsicum baccatum CPANC 2
Capsicum baccatum CLGNC 2
Capsicum baccatum CPAIC 2
Capsicum baccatum CPKNC 1
Capsicum baccatum CLQFC 1
Capsicum baccatum CIQVC 1
Capsicum baccatum CLQVC 1
Capsicum baccatum CPRDC 1
Capsicum baccatum CPQIC 1
Capsicum baccatum CPQFC 1
Capsicum baccatum CTREC 1
Capsicum chinense CPRNC 10
Capsicum chinense CTLNC 5
Capsicum chinense CTLEC 4
Capsicum chinense CPANC 3
Capsicum chinense CPAIC 3
Capsicum chinense CTKEC 2
Capsicum chinense CPRYC 2
Capsicum chinense CSRNC 2
Capsicum chinense CTQEC 2
Capsicum chinense CTQHC 2
Capsicum chinense CTMEC 1
Capsicum chinense CPKNC 1
Capsicum chinense CLQVC 1
Capsicum chinense CIQVC 1
Capsicum chinense CLQFC 1
Capsicum chinense CPQIC 1
Capsicum chinense CPRDC 1
Cicer arietinum CPLIC 1
Coffea canephora CPQYC 2
Coffea canephora CPRFC 1
Coffea canephora CPLVC 1
Coffea canephora CPFFC 1
Cuscuta australis CPRNC 1
Cuscuta australis CTQEC 1
Cuscuta australis CTLEC 1
Cuscuta campestris CTLEC 1
Daucus carota subsp. sativus CYLYC 1
Dendrobium catenatum CPQYC 1
Dichanthelium oligosanthes CPQYC 1
Dichanthelium oligosanthes CPQFC 1
Dichanthelium oligosanthes CPLYC 1
Dorcoceras hygrometricum CPLYC 1
Erythranthe guttata CPLYC 1
Eucalyptus grandis CPLVC 1
Fagus sylvatica CPLYC 1
Genlisea aurea CPLFC 1
Genlisea aurea CYLIC 1
Handroanthus impetiginosus CPLYC 3
Hordeum vulgare subsp. vulgare CPQYC 1
Jatropha curcas CPLYC 1
Juglans regia CPLYC 1
Leersia perrieri CPQFC 2
Manihot esculenta CPLYC 2
Medicago truncatula CPQFC 2
Morus notabilis CPQYC 1
Mucuna pruriens CPQIC 1
Nicotiana acuminata CPRNC 12
Nicotiana acuminata CPFNC 1
Nicotiana alata CPRNC 12
Nicotiana alata CTLNC 6
Nicotiana attenuata CPRNC 43
Nicotiana attenuata CPQFC 2
Nicotiana attenuata CTTEC 2
Nicotiana attenuata CTRNC 1
Nicotiana attenuata CTKEC 1
Nicotiana attenuata CPRDC 1
Nicotiana attenuata CLQFC 1
Nicotiana benthamiana CPRNC 4
Nicotiana benthamiana CTFEC 2
Nicotiana benthamiana CTREC 1
Nicotiana cavicola CTFEC 2
Nicotiana cavicola CTREC 1
Nicotiana clevelandii CPRNC 11
Nicotiana corymbosa CPRNC 2
Nicotiana corymbosa CPFNC 1
Nicotiana glutinosa CPRNC 22
Nicotiana glutinosa CPLNC 4
Nicotiana linearis CPRNC 9
Nicotiana megalosiphon CPRNC 6
Nicotiana megalosiphon CTFEC 2
Nicotiana megalosiphon CTREC 1
Nicotiana miersii CPRNC 10
Nicotiana miersii CTFNC 1
Nicotiana obtusifolia CPRNC 26
Nicotiana obtusifolia CPFNC 4
Nicotiana occidentalis subsp. hesperis CPRNC 6
Nicotiana occidentalis subsp. hesperis CTREC 3
Nicotiana occidentalis subsp. hesperis CTIEC 2
Nicotiana pauciflora CPRNC 10
Nicotiana pauciflora CPFNC 1
Nicotiana quadrivalvis CPRNC 11
Nicotiana repanda CPLNC 6
Nicotiana repanda CPRNC 2
Nicotiana repanda CPQNC 2
Nicotiana repanda CTFNC 1
Nicotiana rustica CPRNC 8
Nicotiana rustica CTLNC 5
Nicotiana simulans CPRNC 6
Nicotiana simulans CTFEC 2
Nicotiana simulans CTREC 1
Nicotiana spegazzinii CPRNC 7
Nicotiana spegazzinii CPRIC 2
Nicotiana sylvestris CPRNC 41
Nicotiana sylvestris CTLNC 6
Nicotiana sylvestris CRRNC 2
Nicotiana sylvestris CTRNC 2
Nicotiana sylvestris CTTEC 2
Nicotiana sylvestris CPQFC 2
Nicotiana sylvestris CPLNC 2
Nicotiana sylvestris CLQKC 1
Nicotiana sylvestris CLQFC 1
Nicotiana sylvestris CPRDC 1
Nicotiana sylvestris CSFNC 1
Nicotiana sylvestris CTKEC 1
Nicotiana tabacum CPRNC 77
Nicotiana tabacum CTLNC 10
Nicotiana tabacum CPLNC 7
Nicotiana tabacum CPFNC 5
Nicotiana tabacum CPQFC 4
Nicotiana tabacum CTTEC 4
Nicotiana tabacum CTRNC 4
Nicotiana tabacum CTKEC 2
Nicotiana tabacum CRRNC 2
Nicotiana tabacum CPRDC 2
Nicotiana tabacum CPPNC 2
Nicotiana tabacum CLQFC 2
Nicotiana tabacum CTQDC 1
Nicotiana umbratica CPRNC 6
Nicotiana umbratica CTFEC 2
Nicotiana umbratica CTREC 1
Noccaea caerulescens CPLYC 4
Olea europaea CTKEC 1
Oryza barthii CPQFC 1
Oryza brachyantha CPQFC 1
Oryza glaberrima CPQFC 1
Oryza glumipatula CPQFC 1
Oryza meridionalis CPQFC 1
Oryza nivara CPQFC 1
Oryza punctata CPQFC 1
Oryza rufipogon CPQFC 1
Oryza sativa subsp. indica CPQFC 1
Oryza sativa subsp. japonica CPQFC 2
Panicum hallii CPQYC 1
Panicum hallii var. hallii CPQYC 2
Panicum hallii var. hallii CAMYC 2
Panicum miliaceum CAMYC 1
Parasponia andersonii CPQFC 1
Populus trichocarpa CPLYC 1
Prunus dulcis CPQYC 2
Prunus dulcis CNKIC 1
Prunus persica CPQYC 2
Prunus persica CNKIC 1
Prunus yedoensis var. nudiflora CNKIC 1
Punica granatum CPQYC 1
Ricinus communis CPLYC 1
Rosa chinensis CPLIC 2
Rosa chinensis CIQIC 1
Rosa chinensis CPQFC 1
Rosa chinensis CPQIC 1
Saccharum hybrid cultivar R570 CPMYC 1
Saccharum hybrid cultivar R570 CIEIC 1
Selaginella moellendorffii CPLIC 4
Selaginella moellendorffii CTREC 3
Selaginella moellendorffii CTLEC 2
Selaginella moellendorffii CTFKC 1
Selaginella moellendorffii CPQYC 1
Setaria italica CAMYC 2
Setaria viridis CAMYC 1
Solanum americanum CTREC 5
Solanum americanum CTFEC 2
Solanum americanum CPLFC 2
Solanum chacoense CPLNC 4
Solanum chacoense CSYEC 2
Solanum chacoense CSKEC 2
Solanum chacoense CTQQC 2
Solanum chacoense CTLEC 1
Solanum chacoense CPKNC 1
Solanum chacoense CPRIC 1
Solanum lycopersicum CTKEC 12
Solanum lycopersicum CTFNC 11
Solanum lycopersicum CTREC 7
Solanum lycopersicum CPRNC 7
Solanum lycopersicum CPKEC 4
Solanum lycopersicum CTQQC 4
Solanum lycopersicum CPSYC 4
Solanum lycopersicum CTMEC 3
Solanum lycopersicum CPLNC 2
Solanum lycopersicum CHLNC 2
Solanum lycopersicum CPFNC 2
Solanum lycopersicum CPQFC 1
Solanum melongena CPRNC 1
Solanum nigrum CPRNC 6
Solanum nigrum CTREC 3
Solanum nigrum CTFEC 2
Solanum nigrum CPLYC 2
Solanum phureja CPRNC 2
Solanum phureja CTLEC 1
Solanum tuberosum CPLNC 30
Solanum tuberosum CPRNC 25
Solanum tuberosum CTLEC 22
Solanum tuberosum CSKEC 19
Solanum tuberosum CTQQC 4
Solanum tuberosum CLQVC 4
Solanum tuberosum CLQYC 3
Solanum tuberosum CPQFC 3
Solanum tuberosum CTKEC 3
Solanum tuberosum CSYEC 2
Solanum tuberosum CTQEC 2
Solanum tuberosum CPPNC 2
Solanum tuberosum CPFNC 2
Solanum tuberosum CPFYC 2
Solanum tuberosum CPKNC 2
Solanum tuberosum CIREC 1
Solanum tuberosum CPRIC 1
Solanum tuberosum CTREC 1
Solanum tuberosum CTMEC 1
Solanum tuberosum CTRNC 1
Sorghum bicolor CPQYC 1
Sorghum bicolor CIETC 1
Sorghum bicolor CPLYC 1
Spinacia oleracea CPQFC 1
Triticum aestivum CPQYC 2
Triticum aestivum CHQYC 1
Triticum turgidum subsp. durum CPQYC 1
Triticum urartu CPQYC 1
Vitis vinifera CPLYC 1
Zea mays CPQFC 2
To find which RCLs are found in a particular Genus and its number of Occurrences. This information can be retreived finding RCL Frequency in Genus using Tables Sequence_Domains,Taxonomy and Domains.
Genus RCL Number Of Occurences
Zea CPQFC 2
Vitis CPLYC 1
Triticum CHQYC 1
Triticum CPQYC 4
Spinacia CPQFC 1
Sorghum CIETC 1
Sorghum CPLYC 1
Sorghum CPQYC 1
Solanum CHLNC 2
Solanum CIREC 1
Solanum CLQVC 4
Solanum CLQYC 3
Solanum CPFNC 4
Solanum CPFYC 2
Solanum CPKEC 4
Solanum CPKNC 3
Solanum CPLFC 2
Solanum CPLNC 36
Solanum CPLYC 2
Solanum CPPNC 2
Solanum CPQFC 4
Solanum CPRIC 2
Solanum CPRNC 41
Solanum CPSYC 4
Solanum CSKEC 21
Solanum CSYEC 4
Solanum CTFEC 4
Solanum CTFNC 11
Solanum CTKEC 15
Solanum CTLEC 24
Solanum CTMEC 4
Solanum CTQEC 2
Solanum CTQQC 10
Solanum CTREC 16
Solanum CTRNC 1
Setaria CAMYC 3
Selaginella CPLIC 4
Selaginella CPQYC 1
Selaginella CTFKC 1
Selaginella CTLEC 2
Selaginella CTREC 3
Saccharum CIEIC 1
Saccharum CPMYC 1
Rosa CIQIC 1
Rosa CPLIC 2
Rosa CPQFC 1
Rosa CPQIC 1
Ricinus CPLYC 1
Punica CPQYC 1
Prunus CNKIC 3
Prunus CPQYC 4
Populus CPLYC 1
Parasponia CPQFC 1
Panicum CAMYC 3
Panicum CPQYC 3
Oryza CPQFC 11
Olea CTKEC 1
Noccaea CPLYC 4
Nicotiana CLQFC 4
Nicotiana CLQKC 1
Nicotiana CPFNC 12
Nicotiana CPLNC 19
Nicotiana CPPNC 2
Nicotiana CPQFC 8
Nicotiana CPQNC 2
Nicotiana CPRDC 4
Nicotiana CPRIC 2
Nicotiana CPRNC 331
Nicotiana CRRNC 4
Nicotiana CSFNC 1
Nicotiana CTFEC 10
Nicotiana CTFNC 2
Nicotiana CTIEC 2
Nicotiana CTKEC 4
Nicotiana CTLNC 27
Nicotiana CTQDC 1
Nicotiana CTREC 8
Nicotiana CTRNC 7
Nicotiana CTTEC 8
Mucuna CPQIC 1
Morus CPQYC 1
Medicago CPQFC 2
Manihot CPLYC 2
Leersia CPQFC 2
Juglans CPLYC 1
Jatropha CPLYC 1
Hordeum CPQYC 1
Handroanthus CPLYC 3
Genlisea CPLFC 1
Genlisea CYLIC 1
Fagus CPLYC 1
Eucalyptus CPLVC 1
Erythranthe CPLYC 1
Dorcoceras CPLYC 1
Dichanthelium CPLYC 1
Dichanthelium CPQFC 1
Dichanthelium CPQYC 1
Dendrobium CPQYC 1
Daucus CYLYC 1
Cuscuta CPRNC 1
Cuscuta CTLEC 2
Cuscuta CTQEC 1
Coffea CPFFC 1
Coffea CPLVC 1
Coffea CPQYC 2
Coffea CPRFC 1
Cicer CPLIC 1
Capsicum CIQVC 4
Capsicum CLGNC 2
Capsicum CLQFC 2
Capsicum CLQVC 4
Capsicum CPAIC 5
Capsicum CPANC 5
Capsicum CPKNC 14
Capsicum CPQFC 3
Capsicum CPQIC 3
Capsicum CPRDC 3
Capsicum CPRNC 203
Capsicum CPRYC 94
Capsicum CSRNC 5
Capsicum CTKEC 6
Capsicum CTLDC 2
Capsicum CTLEC 24
Capsicum CTLNC 86
Capsicum CTMEC 3
Capsicum CTPNC 2
Capsicum CTQEC 8
Capsicum CTQHC 6
Capsicum CTREC 7
Capsella CPLYC 1
Brassica CPLYC 5
Brachypodium CPQYC 1
Arabidopsis CPLYC 3
Apostasia CPLYC 1
Ananas CPQYC 2
Aegilops CHQYC 2
Aegilops CPQYC 1
This analysis shows the number of Domains in which a RCL is found for Top 10 RCL
RCL Domain Count
CPRNC 291
CTLNC 36
CPLNC 35
CTLEC 25
CPLYC 23
CPQFC 23
CTKEC 20
CPQYC 19
CTREC 19
CPRYC 18
Here we find the number of times an Amino Acid has appeared at P1, P2 and P1` position in PIN-II PI database. P1, P2 and P1` are determined from the RCL sequence.
Residue Amino Acid Occurrences
P1 Residue A 10
P1 Residue E 2
P1 Residue F 48
P1 Residue G 2
P1 Residue I 2
P1 Residue K 71
P1 Residue L 269
P1 Residue M 14
P1 Residue P 6
P1 Residue Q 121
P1 Residue R 734
P1 Residue S 4
P1 Residue T 8
P1 Residue Y 4
P1` Residue D 10
P1` Residue E 184
P1` Residue F 47
P1` Residue H 6
P1` Residue I 27
P1` Residue K 2
P1` Residue N 825
P1` Residue Q 10
P1` Residue T 1
P1` Residue V 14
P1` Residue Y 169
P2 Residue A 6
P2 Residue H 5
P2 Residue I 8
P2 Residue L 20
P2 Residue N 3
P2 Residue P 906
P2 Residue R 4
P2 Residue S 31
P2 Residue T 310
P2 Residue Y 2